SNP Report

Basic Infomation

Name	rs7081889 dbSNP
Location	chr:10,82165427
Allele	C/A

LD-proxy of rSNPs(r²>0.8) (count: 72)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1047952	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs10509414	1.00[CHB][hapmap]
rs10749560	0.81[EUR][1000 genomes]
rs10749562	0.83[CEU][hapmap]
rs10749569	0.89[EUR][1000 genomes]
rs10749595	0.85[EUR][1000 genomes]
rs10788576	0.82[EUR][1000 genomes]
rs10788586	1.00[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs10887838	0.86[EUR][1000 genomes]
rs11202832	0.96[CHD][hapmap]
rs12253992	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12262228	0.82[ASN][1000 genomes]
rs1340373	0.86[EUR][1000 genomes]
rs1340374	0.89[EUR][1000 genomes]
rs1340375	1.00[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs1340376	1.00[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs1340379	0.89[EUR][1000 genomes]
rs1340380	1.00[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs1340384	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs1417221	0.92[CEU][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes]
rs1538819	0.89[EUR][1000 genomes]
rs1538822	0.96[CHD][hapmap]
rs1572819	0.96[CEU][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs17105023	0.88[CHB][hapmap]
rs1815650	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1815651	0.85[EUR][1000 genomes]
rs1870142	0.88[CEU][hapmap]
rs1870143	0.83[CHD][hapmap]
rs1870144	0.83[CHD][hapmap]
rs1890889	0.96[CEU][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs1890890	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs1934692	1.00[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs1934693	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1934694	1.00[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs1934695	0.88[CEU][hapmap]
rs1934696	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1970433	0.87[EUR][1000 genomes]
rs1972371	0.89[EUR][1000 genomes]
rs2050824	0.89[EUR][1000 genomes]
rs2185426	0.88[CEU][hapmap]
rs3802637	0.81[CEU][hapmap]
rs3802638	0.80[CEU][hapmap]
rs4258322	0.87[CEU][hapmap]
rs4468295	0.89[EUR][1000 genomes]
rs4515913	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4536152	1.00[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs4601708	0.89[EUR][1000 genomes]
rs4934083	0.87[CEU][hapmap]
rs4934134	0.85[JPT][hapmap];0.89[YRI][hapmap];0.82[ASN][1000 genomes]
rs4934139	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs4934153	0.88[CEU][hapmap]
rs6585944	0.89[EUR][1000 genomes]
rs6585946	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6585986	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs6585994	0.83[CHD][hapmap]
rs7067612	0.82[ASN][1000 genomes]
rs7071752	0.92[ASW][hapmap];0.96[CHD][hapmap];0.86[JPT][hapmap];0.95[YRI][hapmap];0.82[ASN][1000 genomes]
rs7077854	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7078075	0.86[EUR][1000 genomes]
rs7078707	0.87[EUR][1000 genomes]
rs7082102	0.83[CEU][hapmap]
rs7082705	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs7085379	0.82[ASN][1000 genomes]
rs7088374	0.82[ASN][1000 genomes]
rs7089003	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7092237	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7098045	0.89[EUR][1000 genomes]
rs7899791	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs7903701	0.88[EUR][1000 genomes]
rs7914156	0.82[EUR][1000 genomes]
rs8735	0.83[CHD][hapmap]
rs946892	1.00[CEU][hapmap];0.89[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
FAM213A	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 3)

eQTL related gene	Source
C10orf57	SCAN
TSPAN14	SCAN
ANXA11	SCAN