SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 26)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10788619	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10788620	0.87[EUR][1000 genomes]
rs10788625	0.87[EUR][1000 genomes]
rs10887865	0.87[EUR][1000 genomes]
rs10887871	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs10887872	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10887873	0.89[CEU][hapmap];0.81[TSI][hapmap];0.87[EUR][1000 genomes]
rs10887880	0.84[CEU][hapmap]
rs10887903	0.89[CHD][hapmap]
rs11202832	0.89[CEU][hapmap]
rs11202960	0.89[CHD][hapmap]
rs14073	0.88[CEU][hapmap];0.81[TSI][hapmap];0.87[EUR][1000 genomes]
rs1870143	0.84[CEU][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes]
rs1870144	0.89[CEU][hapmap];0.81[TSI][hapmap];0.87[EUR][1000 genomes]
rs2168721	0.88[CHD][hapmap]
rs3195896	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs3195899	0.89[CEU][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs3195900	0.83[EUR][1000 genomes]
rs4933390	0.89[CHD][hapmap]
rs4934147	0.87[EUR][1000 genomes]
rs4934167	0.89[CHD][hapmap]
rs66586255	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7081756	1.00[CHB][hapmap]
rs7096715	0.95[ASN][1000 genomes]
rs8735	0.89[CEU][hapmap];0.81[TSI][hapmap];0.87[EUR][1000 genomes]
rs9787439	1.00[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
FAM213A	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 2)

eQTL related gene	Source
NFIC	SCAN
TSPAN14	Pritchard