SNP Report
Basic Infomation
| Name | rs10788619 dbSNP |
|---|---|
| Location | chr:10,82195355 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10736365 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10788620 | 0.88[EUR][1000 genomes] |
| rs10788625 | 0.88[EUR][1000 genomes] |
| rs10887865 | 0.88[EUR][1000 genomes] |
| rs10887871 | 0.88[EUR][1000 genomes] |
| rs10887872 | 0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10887873 | 0.88[EUR][1000 genomes] |
| rs14073 | 0.88[EUR][1000 genomes] |
| rs1870143 | 0.88[EUR][1000 genomes] |
| rs1870144 | 0.88[EUR][1000 genomes] |
| rs3195896 | 0.88[EUR][1000 genomes] |
| rs3195899 | 0.84[EUR][1000 genomes] |
| rs3195900 | 0.84[EUR][1000 genomes] |
| rs4934147 | 0.88[EUR][1000 genomes] |
| rs66586255 | 0.85[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7096715 | 0.95[ASN][1000 genomes] |
| rs8735 | 0.88[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FAM213A | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014