SNP Report
Basic Infomation
| Name | rs10749559 dbSNP |
|---|---|
| Location | chr:10,82080397 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10160056 | 0.96[CEU][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs10788570 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10788571 | 0.93[ASW][hapmap];0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10788579 | 0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10887761 | 0.99[ASN][1000 genomes] |
| rs10887871 | 0.83[CEU][hapmap] |
| rs10887873 | 0.80[CEU][hapmap] |
| rs11202652 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11202832 | 0.80[CEU][hapmap];0.81[CHD][hapmap];0.80[TSI][hapmap] |
| rs12411833 | 0.93[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs12415730 | 0.83[ASN][1000 genomes] |
| rs1340381 | 0.85[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs14073 | 0.80[CEU][hapmap] |
| rs1538822 | 0.81[CHD][hapmap];0.87[JPT][hapmap] |
| rs1870144 | 0.80[CEU][hapmap] |
| rs1934697 | 0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs3195899 | 0.80[CEU][hapmap] |
| rs4146515 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs4934081 | 0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs55901776 | 0.99[ASN][1000 genomes] |
| rs56080607 | 0.83[ASN][1000 genomes] |
| rs57342950 | 0.83[ASN][1000 genomes] |
| rs59806247 | 0.82[ASN][1000 genomes] |
| rs61859189 | 0.82[ASN][1000 genomes] |
| rs61859195 | 0.83[ASN][1000 genomes] |
| rs7071752 | 0.81[CHD][hapmap] |
| rs8735 | 0.80[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MAT1A | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014