SNP Report

Basic Infomation

Name	rs12246441 dbSNP
Location	chr:10,82257736
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 54)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10788626	1.00[CHB][hapmap]
rs10788627	1.00[CHB][hapmap]
rs10887880	1.00[CHB][hapmap]
rs10887881	1.00[CHB][hapmap]
rs10887884	1.00[CHB][hapmap]
rs10887890	1.00[CHB][hapmap]
rs10887894	1.00[CHB][hapmap]
rs10887900	1.00[CHB][hapmap]
rs10887901	1.00[CHB][hapmap]
rs10887902	1.00[CHB][hapmap]
rs10887903	1.00[CHB][hapmap]
rs10887905	1.00[CHB][hapmap]
rs10887914	1.00[CHB][hapmap]
rs11185829	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11202923	1.00[CHB][hapmap]
rs11202957	1.00[CHB][hapmap]
rs11202959	1.00[CHB][hapmap]
rs11202960	1.00[CHB][hapmap]
rs11202963	1.00[CHB][hapmap]
rs12245180	1.00[CHB][hapmap]
rs12246432	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12260962	1.00[CHB][hapmap];0.93[GIH][hapmap];0.87[ASN][1000 genomes]
rs12264252	0.88[CEU][hapmap];0.80[MEX][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12269333	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12269629	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12769369	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12773636	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17680103	1.00[CHB][hapmap]
rs17680741	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs1870146	1.00[CHB][hapmap]
rs1870147	1.00[CHB][hapmap]
rs2125040	1.00[CHB][hapmap]
rs2168721	1.00[CHB][hapmap]
rs2343550	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35414786	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35521186	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35998463	0.84[EUR][1000 genomes]
rs36113069	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4303181	0.87[ASN][1000 genomes]
rs4933390	1.00[CHB][hapmap]
rs4934165	1.00[CHB][hapmap]
rs4934167	1.00[CHB][hapmap]
rs4934168	1.00[CHB][hapmap]
rs4934170	1.00[CHB][hapmap]
rs55943223	0.87[ASN][1000 genomes]
rs7077373	1.00[CHB][hapmap]
rs7078254	1.00[CHB][hapmap]
rs7083519	1.00[CHB][hapmap]
rs7085606	1.00[CHB][hapmap]
rs7093808	0.87[ASN][1000 genomes]
rs7095954	1.00[CHB][hapmap]
rs7902355	0.86[ASW][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];0.86[LWK][hapmap];0.81[MEX][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs878651	0.82[CEU][hapmap];1.00[CHB][hapmap];0.80[TSI][hapmap];0.87[ASN][1000 genomes]
rs9665678	0.87[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
TSPAN14	Distal transcriptional regulation
TSPAN14	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)