SNP Report
Basic Infomation
| Name | rs11185829 dbSNP |
|---|---|
| Location | chr:10,82267850 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12246432 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12246441 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12260962 | 0.87[ASN][1000 genomes] |
| rs12264252 | 1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12269333 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12269629 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12769369 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs12773636 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17680741 | 0.87[ASN][1000 genomes] |
| rs2343550 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35414786 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35521186 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35998463 | 0.84[EUR][1000 genomes] |
| rs36113069 | 0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4303181 | 0.87[ASN][1000 genomes] |
| rs55943223 | 0.87[ASN][1000 genomes] |
| rs7093808 | 0.87[ASN][1000 genomes] |
| rs7902355 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs878651 | 0.87[ASN][1000 genomes] |
| rs9665678 | 0.87[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TSPAN14 | Distal transcriptional regulation |
| TSPAN14 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014