SNP Report
Basic Infomation
| Name | rs17680741 dbSNP |
|---|---|
| Location | chr:10,82251514 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 39)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10887894 | 1.00[CHB][hapmap] |
| rs10887900 | 1.00[CHB][hapmap] |
| rs10887901 | 1.00[CHB][hapmap] |
| rs10887902 | 1.00[CHB][hapmap] |
| rs10887903 | 1.00[CHB][hapmap] |
| rs10887905 | 1.00[CHB][hapmap] |
| rs10887914 | 1.00[CHB][hapmap] |
| rs11185829 | 0.87[ASN][1000 genomes] |
| rs11202957 | 1.00[CHB][hapmap] |
| rs11202959 | 1.00[CHB][hapmap] |
| rs11202960 | 1.00[CHB][hapmap] |
| rs11202963 | 1.00[CHB][hapmap] |
| rs12245180 | 1.00[CHB][hapmap] |
| rs12246432 | 1.00[CHB][hapmap] |
| rs12246441 | 1.00[CHB][hapmap];0.87[ASN][1000 genomes] |
| rs12260962 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12269333 | 0.87[ASN][1000 genomes] |
| rs12269629 | 0.87[ASN][1000 genomes] |
| rs12773636 | 1.00[CHB][hapmap];0.87[ASN][1000 genomes] |
| rs17680103 | 1.00[CHB][hapmap] |
| rs1870146 | 1.00[CHB][hapmap] |
| rs1870147 | 1.00[CHB][hapmap] |
| rs2125040 | 1.00[CHB][hapmap] |
| rs2168721 | 1.00[CHB][hapmap] |
| rs2343550 | 1.00[CHB][hapmap];0.87[ASN][1000 genomes] |
| rs35414786 | 0.87[ASN][1000 genomes] |
| rs35521186 | 0.87[ASN][1000 genomes] |
| rs4933390 | 1.00[CHB][hapmap] |
| rs4934167 | 1.00[CHB][hapmap] |
| rs55943223 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7077373 | 1.00[CHB][hapmap] |
| rs7078254 | 1.00[CHB][hapmap] |
| rs7083519 | 1.00[CHB][hapmap] |
| rs7085606 | 1.00[CHB][hapmap] |
| rs7088704 | 0.82[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs7093808 | 1.00[CEU][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7095954 | 1.00[CHB][hapmap] |
| rs7902355 | 1.00[CHB][hapmap];0.87[ASN][1000 genomes] |
| rs878651 | 1.00[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TSPAN14 | Distal transcriptional regulation |
| TSPAN14 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014