SNP Report
Basic Infomation
| Name | rs1538818 dbSNP |
|---|---|
| Location | chr:10,82122793 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 30)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12411833 | 1.00[CEU][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes] |
| rs12414521 | 1.00[YRI][hapmap] |
| rs12415730 | 0.97[EUR][1000 genomes] |
| rs12770472 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs12770500 | 0.86[EUR][1000 genomes] |
| rs12773636 | 1.00[YRI][hapmap] |
| rs17617406 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[MEX][hapmap];0.85[TSI][hapmap] |
| rs17677908 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs17678338 | 1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs17679603 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[MEX][hapmap];1.00[YRI][hapmap] |
| rs17680103 | 0.83[CEU][hapmap];1.00[YRI][hapmap] |
| rs1870146 | 0.83[CEU][hapmap];1.00[YRI][hapmap] |
| rs2343302 | 0.84[EUR][1000 genomes] |
| rs2880599 | 0.84[EUR][1000 genomes] |
| rs35436409 | 0.84[EUR][1000 genomes] |
| rs55855057 | 0.87[EUR][1000 genomes] |
| rs55899456 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs56080607 | 0.97[EUR][1000 genomes] |
| rs57342950 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs59806247 | 0.97[EUR][1000 genomes] |
| rs61859189 | 0.97[EUR][1000 genomes] |
| rs61859191 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs61859195 | 0.97[EUR][1000 genomes] |
| rs61859196 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs61859197 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs61859198 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs61859199 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7074356 | 0.92[CEU][hapmap] |
| rs7097080 | 0.92[CEU][hapmap];0.83[TSI][hapmap] |
| rs878651 | 1.00[CHD][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DYDC2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014