SNP Report
Basic Infomation
| Name | rs58082336 dbSNP |
|---|---|
| Location | chr:10,82215867 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10509414 | 1.00[EUR][1000 genomes] |
| rs17105023 | 1.00[EUR][1000 genomes] |
| rs3802639 | 1.00[EUR][1000 genomes] |
| rs56154304 | 0.97[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56758452 | 1.00[EUR][1000 genomes] |
| rs59140600 | 1.00[EUR][1000 genomes] |
| rs60262537 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs60771270 | 1.00[EUR][1000 genomes] |
| rs7085379 | 1.00[EUR][1000 genomes] |
| rs7093922 | 1.00[EUR][1000 genomes] |
| rs74143117 | 1.00[EUR][1000 genomes] |
| rs74143132 | 0.97[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74143134 | 0.95[AFR][1000 genomes] |
| rs74143135 | 0.95[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74143136 | 0.95[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TSPAN14 | Proximal transcriptional regulation |
| FAM213A | Distal transcriptional regulation |
| ENSG00000226659 | Distal transcriptional regulation |
| SH2D4B | Distal transcriptional regulation |
| TSPAN14 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014