SNP Report
Basic Infomation
| Name | rs74143132 dbSNP |
|---|---|
| Location | chr:10,82214821 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10918 | 0.96[EUR][1000 genomes] |
| rs17617713 | 0.96[EUR][1000 genomes] |
| rs17618331 | 0.96[EUR][1000 genomes] |
| rs56154304 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58082336 | 0.97[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60262537 | 0.96[ASN][1000 genomes] |
| rs7070261 | 0.88[EUR][1000 genomes] |
| rs7070672 | 0.88[EUR][1000 genomes] |
| rs7090612 | 0.88[EUR][1000 genomes] |
| rs7094927 | 0.88[EUR][1000 genomes] |
| rs72819576 | 0.84[EUR][1000 genomes] |
| rs72819577 | 0.84[EUR][1000 genomes] |
| rs72819578 | 0.88[EUR][1000 genomes] |
| rs72819579 | 0.88[EUR][1000 genomes] |
| rs72819580 | 0.88[EUR][1000 genomes] |
| rs72819581 | 0.88[EUR][1000 genomes] |
| rs72819584 | 0.88[EUR][1000 genomes] |
| rs72819585 | 0.88[EUR][1000 genomes] |
| rs73305106 | 0.84[EUR][1000 genomes] |
| rs74143116 | 1.00[EUR][1000 genomes] |
| rs74143134 | 0.92[AFR][1000 genomes] |
| rs74143135 | 0.92[AFR][1000 genomes] |
| rs74143136 | 0.92[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TSPAN14 | Proximal transcriptional regulation |
| ENSG00000235924 | Distal transcriptional regulation |
| SFTPD | Distal transcriptional regulation |
| ENSG00000225100 | Distal transcriptional regulation |
| FAM213A | Distal transcriptional regulation |
| ENSG00000226659 | Distal transcriptional regulation |
| SH2D4B | Distal transcriptional regulation |
| TSPAN14 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014