SNP Report
Basic Infomation
| Name | rs72819578 dbSNP |
|---|---|
| Location | chr:10,82225610 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 41)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1007521 | 0.83[AMR][1000 genomes] |
| rs1047951 | 1.00[AFR][1000 genomes] |
| rs10918 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11202421 | 1.00[AFR][1000 genomes] |
| rs17616335 | 1.00[AFR][1000 genomes] |
| rs17617713 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs17618331 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs17680710 | 0.92[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs41284080 | 1.00[AFR][1000 genomes] |
| rs56154304 | 0.88[EUR][1000 genomes] |
| rs7070261 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7070672 | 0.83[EUR][1000 genomes] |
| rs7090612 | 0.83[EUR][1000 genomes] |
| rs7094927 | 0.83[EUR][1000 genomes] |
| rs71481596 | 1.00[AFR][1000 genomes] |
| rs71481597 | 1.00[AFR][1000 genomes] |
| rs71481598 | 1.00[AFR][1000 genomes] |
| rs72805703 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs72805704 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs72805707 | 1.00[AFR][1000 genomes] |
| rs72805708 | 1.00[AFR][1000 genomes] |
| rs72805711 | 1.00[AFR][1000 genomes] |
| rs72805713 | 1.00[AFR][1000 genomes] |
| rs72805714 | 1.00[AFR][1000 genomes] |
| rs72805716 | 1.00[AFR][1000 genomes] |
| rs72805718 | 1.00[AFR][1000 genomes] |
| rs72819576 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs72819577 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs72819579 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72819580 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72819581 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72819584 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72819585 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72819591 | 0.92[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs72819595 | 0.92[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs72819601 | 0.92[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs72819602 | 0.92[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs72821609 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs72824340 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs74143116 | 0.88[EUR][1000 genomes] |
| rs74143132 | 0.88[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TSPAN14 | Distal transcriptional regulation |
| TSPAN14 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014