SNP Report

Basic Infomation

Name	rs17617713 dbSNP
Location	chr:10,82191700
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 43)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1047951	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10918	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11202421	1.00[AFR][1000 genomes]
rs17616335	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs17618331	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17680710	1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs41284080	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs45494892	0.83[EUR][1000 genomes]
rs56154304	0.96[EUR][1000 genomes]
rs7070261	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7070672	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7090145	1.00[CEU][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs7090612	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7094927	0.91[EUR][1000 genomes]
rs71481596	1.00[AFR][1000 genomes]
rs71481597	1.00[AFR][1000 genomes]
rs71481598	1.00[AFR][1000 genomes]
rs72805703	1.00[AFR][1000 genomes]
rs72805704	1.00[AFR][1000 genomes]
rs72805707	1.00[AFR][1000 genomes]
rs72805708	1.00[AFR][1000 genomes]
rs72805711	1.00[AFR][1000 genomes]
rs72805713	1.00[AFR][1000 genomes]
rs72805714	1.00[AFR][1000 genomes]
rs72805716	1.00[AFR][1000 genomes]
rs72805718	1.00[AFR][1000 genomes]
rs72819576	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72819577	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72819578	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72819579	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72819580	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72819581	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72819584	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72819585	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72819591	0.85[AMR][1000 genomes]
rs72819595	0.85[AMR][1000 genomes]
rs72819601	0.85[AMR][1000 genomes]
rs72819602	0.85[AMR][1000 genomes]
rs72821609	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72824340	1.00[AFR][1000 genomes]
rs73305106	0.87[EUR][1000 genomes]
rs74143116	0.96[EUR][1000 genomes]
rs74143132	0.96[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
TSPAN14	Distal transcriptional regulation
FAM213A	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)