SNP Report
Basic Infomation
| Name | rs7070672 dbSNP |
|---|---|
| Location | chr:10,82177754 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1047951 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs10918 | 0.91[EUR][1000 genomes] |
| rs17616335 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs17617713 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs17618331 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs41284080 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs45494892 | 0.91[EUR][1000 genomes] |
| rs56154304 | 0.88[EUR][1000 genomes] |
| rs7070261 | 0.83[EUR][1000 genomes] |
| rs7089316 | 0.91[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs7090145 | 0.91[EUR][1000 genomes] |
| rs7090612 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7094927 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72819578 | 0.83[EUR][1000 genomes] |
| rs72819579 | 0.83[EUR][1000 genomes] |
| rs72819580 | 0.83[EUR][1000 genomes] |
| rs72819581 | 0.83[EUR][1000 genomes] |
| rs72819584 | 0.83[EUR][1000 genomes] |
| rs72819585 | 0.83[EUR][1000 genomes] |
| rs73305106 | 0.96[EUR][1000 genomes] |
| rs74143116 | 0.88[EUR][1000 genomes] |
| rs74143132 | 0.88[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FAM213A | Proximal transcriptional regulation |
| FAM213A | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014