SNP Report
Basic Infomation
| Name | rs7090145 dbSNP |
|---|---|
| Location | chr:10,82089535 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1047951 | 1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10918 | 0.83[EUR][1000 genomes] |
| rs11202175 | 1.00[CEU][hapmap] |
| rs1340384 | 1.00[YRI][hapmap] |
| rs1417221 | 1.00[YRI][hapmap] |
| rs1572819 | 1.00[YRI][hapmap] |
| rs17616335 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17617713 | 1.00[CEU][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs17618331 | 1.00[CEU][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs1890889 | 1.00[YRI][hapmap] |
| rs1890890 | 1.00[YRI][hapmap] |
| rs41284080 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs45494892 | 1.00[EUR][1000 genomes] |
| rs7070672 | 0.91[EUR][1000 genomes] |
| rs7090612 | 0.91[EUR][1000 genomes] |
| rs7094927 | 0.91[EUR][1000 genomes] |
| rs73305106 | 0.87[EUR][1000 genomes] |
| rs7899791 | 1.00[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000235858 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| ANTXR2 | seeQTL |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014