SNP Report
Basic Infomation
| Name | rs71481597 dbSNP |
|---|---|
| Location | chr:10,82040602 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1047951 | 1.00[AFR][1000 genomes] |
| rs11202404 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11202421 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs12354540 | 1.00[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs12354594 | 0.82[AMR][1000 genomes] |
| rs17616335 | 1.00[AFR][1000 genomes] |
| rs17617713 | 1.00[AFR][1000 genomes] |
| rs17618331 | 1.00[AFR][1000 genomes] |
| rs1819684 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2880456 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs35344091 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs41284062 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs41284080 | 1.00[AFR][1000 genomes] |
| rs71481580 | 1.00[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs71481596 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs71481598 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs72819576 | 1.00[AFR][1000 genomes] |
| rs72819577 | 1.00[AFR][1000 genomes] |
| rs72819578 | 1.00[AFR][1000 genomes] |
| rs72819579 | 1.00[AFR][1000 genomes] |
| rs72819580 | 1.00[AFR][1000 genomes] |
| rs72819581 | 1.00[AFR][1000 genomes] |
| rs72819584 | 1.00[AFR][1000 genomes] |
| rs72819585 | 1.00[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MAT1A | Distal transcriptional regulation |
| FAM213A | Distal transcriptional regulation |
| MAT1A | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014