SNP Report
Basic Infomation
| Name | rs2880456 dbSNP |
|---|---|
| Location | chr:10,82046900 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11202112 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs11202150 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs11202404 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs11202421 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12354540 | 0.91[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1819684 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35344091 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs41284062 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs4447114 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs71481580 | 0.91[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs71481596 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs71481597 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs71481598 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7919385 | 0.90[YRI][hapmap];0.96[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MAT1A | Distal transcriptional regulation |
| MAT1A | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014