SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 11)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11202404	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11202421	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12354540	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1819684	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2880456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41284062	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71481580	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71481596	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71481597	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71481598	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7919385	0.96[AFR][1000 genomes]

rSNP related genes

Symbol	Regulation type
MAT1A	Proximal transcriptional regulation
ENSG00000232950	Proximal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)