SNP Report
Basic Infomation
| Name | rs11102678 dbSNP |
|---|---|
| Location | chr:1,114282287 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 46)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10776773 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs10858015 | 0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11102667 | 0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1146183 | 1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1146184 | 1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1146185 | 0.81[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs12144309 | 0.83[GIH][hapmap] |
| rs1217225 | 0.81[ASW][hapmap] |
| rs1217375 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.91[MKK][hapmap];0.85[TSI][hapmap];0.83[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1217379 | 0.85[LWK][hapmap] |
| rs1217382 | 0.90[JPT][hapmap] |
| rs1217393 | 0.90[JPT][hapmap] |
| rs1217397 | 0.90[JPT][hapmap] |
| rs1217401 | 0.90[JPT][hapmap] |
| rs1217403 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs1217406 | 0.87[ASW][hapmap];0.85[LWK][hapmap];0.83[YRI][hapmap] |
| rs1217408 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs1217414 | 0.81[ASW][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.83[MKK][hapmap] |
| rs1217417 | 0.84[ASN][1000 genomes] |
| rs1217418 | 0.81[ASW][hapmap];0.90[LWK][hapmap] |
| rs1217419 | 0.87[ASW][hapmap];0.85[LWK][hapmap] |
| rs1230673 | 0.87[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.94[TSI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1230681 | 0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1230684 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1235000 | 0.81[ASW][hapmap];0.83[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap] |
| rs13524 | 0.93[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1624335 | 0.94[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.83[LWK][hapmap];0.92[MKK][hapmap];0.94[TSI][hapmap] |
| rs1743594 | 0.94[ASW][hapmap];0.91[CEU][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];0.83[LWK][hapmap];0.92[MKK][hapmap];0.94[TSI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1746857 | 0.95[ASN][1000 genomes] |
| rs1746860 | 0.90[JPT][hapmap] |
| rs1935836 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1970559 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.89[MKK][hapmap];0.85[TSI][hapmap];0.80[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2040041 | 0.85[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.88[MKK][hapmap];0.82[TSI][hapmap];0.95[ASN][1000 genomes] |
| rs2185827 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs2476599 | 1.00[ASW][hapmap];0.81[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.91[MKK][hapmap];0.85[TSI][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2476600 | 0.85[LWK][hapmap] |
| rs2476602 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.89[MKK][hapmap];0.82[TSI][hapmap];0.80[AFR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2636000 | 0.95[ASN][1000 genomes] |
| rs2636003 | 0.87[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.94[TSI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs2797416 | 0.85[LWK][hapmap] |
| rs28831807 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs3789597 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3789600 | 0.87[ASW][hapmap];0.83[LWK][hapmap] |
| rs6537798 | 0.87[ASW][hapmap] |
| rs7555634 | 0.85[LWK][hapmap] |
| rs971173 | 0.90[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PHTF1 | Proximal transcriptional regulation |
| PHTF1 | Distal transcriptional regulation |
| PHTF1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014