SNP Report
Basic Infomation
| Name | rs971173 dbSNP |
|---|---|
| Location | chr:1,114447914 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11102678 | 0.90[JPT][hapmap] |
| rs11102695 | 0.86[CEU][hapmap] |
| rs1217375 | 0.90[JPT][hapmap];0.82[MEX][hapmap] |
| rs1217382 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1217393 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1217397 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1217400 | 0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1217401 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1217403 | 0.90[JPT][hapmap] |
| rs1217408 | 0.90[JPT][hapmap] |
| rs1217414 | 0.86[CEU][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap] |
| rs1217423 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1230681 | 0.90[JPT][hapmap] |
| rs1310183 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1746860 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1935836 | 0.90[JPT][hapmap] |
| rs1970559 | 0.90[JPT][hapmap] |
| rs2040041 | 0.90[JPT][hapmap] |
| rs2185827 | 0.90[JPT][hapmap] |
| rs2476599 | 0.90[JPT][hapmap] |
| rs2476602 | 0.90[JPT][hapmap];0.82[MEX][hapmap] |
| rs3789597 | 0.90[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DCLRE1B | Proximal transcriptional regulation |
| AP4B1 | Proximal transcriptional regulation |
| HIPK1 | Distal transcriptional regulation |
| ENSG00000235527 | Distal transcriptional regulation |
| ENSG00000250734 | Distal transcriptional regulation |
| SNX27 | Distal transcriptional regulation |
| PPM1J | Distal transcriptional regulation |
| ENSG00000261595 | Distal transcriptional regulation |
| PHTF1 | Distal transcriptional regulation |
| RSBN1 | Distal transcriptional regulation |
| ENSG00000231128 | Distal transcriptional regulation |
| TPM4 | Distal transcriptional regulation |
| TRIM33 | Distal transcriptional regulation |
| UBTF | Distal transcriptional regulation |
| CSDE1 | Distal transcriptional regulation |
| RBM5 | Distal transcriptional regulation |
| DCLRE1B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014