SNP Report
Basic Infomation
| Name | rs1217382 dbSNP |
|---|---|
| Location | chr:1,114423653 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 32)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10745340 | 0.87[YRI][hapmap] |
| rs10776775 | 0.87[YRI][hapmap] |
| rs10858022 | 0.87[YRI][hapmap] |
| rs11102678 | 0.90[JPT][hapmap] |
| rs11102695 | 0.86[CEU][hapmap] |
| rs1217375 | 0.90[JPT][hapmap] |
| rs1217391 | 0.86[YRI][hapmap] |
| rs1217392 | 0.87[YRI][hapmap] |
| rs1217393 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1217397 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1217400 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1217401 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1217403 | 0.90[JPT][hapmap] |
| rs1217408 | 0.90[JPT][hapmap] |
| rs1217414 | 0.86[CEU][hapmap];0.81[JPT][hapmap] |
| rs1217423 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1230681 | 0.90[JPT][hapmap] |
| rs1310183 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17464525 | 0.87[YRI][hapmap] |
| rs1746860 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1935836 | 0.90[JPT][hapmap] |
| rs1970559 | 0.90[JPT][hapmap] |
| rs2040041 | 0.90[JPT][hapmap] |
| rs2185827 | 0.90[JPT][hapmap] |
| rs2476599 | 0.90[JPT][hapmap] |
| rs2476602 | 0.90[JPT][hapmap] |
| rs3789597 | 0.90[JPT][hapmap] |
| rs3789613 | 0.87[YRI][hapmap] |
| rs6661817 | 0.87[YRI][hapmap] |
| rs7523862 | 0.87[YRI][hapmap] |
| rs7524200 | 0.85[YRI][hapmap] |
| rs971173 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| BCL2L15 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014