SNP Report
Name | rs3789597   dbSNP |
---|---|
Location | chr:1,114256139 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10776773 | 0.83[ASN][1000 genomes] |
rs10858015 | 0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs11102667 | 0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs11102678 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs1146183 | 0.95[CEU][hapmap];0.85[CHB][hapmap];0.85[CHD][hapmap];0.85[GIH][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs1146184 | 0.95[CEU][hapmap];0.85[CHB][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs1146185 | 0.85[CEU][hapmap];0.84[CHB][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs12144309 | 0.84[GIH][hapmap] |
rs1217375 | 1.00[CHB][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.94[MKK][hapmap];0.82[TSI][hapmap];0.83[ASN][1000 genomes] |
rs1217382 | 0.90[JPT][hapmap] |
rs1217393 | 0.91[JPT][hapmap] |
rs1217397 | 0.90[JPT][hapmap] |
rs1217401 | 0.90[JPT][hapmap] |
rs1217403 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes] |
rs1217406 | 0.82[LWK][hapmap];0.83[YRI][hapmap] |
rs1217408 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs1217414 | 0.85[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.82[MKK][hapmap] |
rs1217418 | 0.82[LWK][hapmap] |
rs1217419 | 0.82[LWK][hapmap] |
rs1217423 | 0.82[JPT][hapmap] |
rs1230673 | 0.95[CEU][hapmap];0.85[CHB][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];0.80[MKK][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs1230681 | 1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs1230684 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs1235000 | 0.85[CHB][hapmap];0.85[CHD][hapmap];0.94[GIH][hapmap];0.88[TSI][hapmap] |
rs12757859 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs13524 | 0.95[CEU][hapmap];0.85[CHB][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];0.84[LWK][hapmap];0.83[MKK][hapmap];0.94[TSI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs1624335 | 0.95[CEU][hapmap];0.85[CHB][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];0.82[MKK][hapmap];0.91[TSI][hapmap] |
rs1743594 | 0.86[CEU][hapmap];0.97[GIH][hapmap];0.83[MKK][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs1743595 | 0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes] |
rs1746857 | 0.89[ASN][1000 genomes] |
rs1746860 | 0.90[JPT][hapmap] |
rs1935836 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs1970559 | 1.00[CHB][hapmap];0.85[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.93[MKK][hapmap];0.82[TSI][hapmap] |
rs2040041 | 0.85[CHB][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.94[MKK][hapmap];0.85[TSI][hapmap];0.89[ASN][1000 genomes] |
rs2185827 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes] |
rs2476599 | 0.86[CHB][hapmap];0.87[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.94[MKK][hapmap];0.82[TSI][hapmap];0.85[ASN][1000 genomes] |
rs2476602 | 1.00[CHB][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.93[MKK][hapmap] |
rs2636000 | 0.89[ASN][1000 genomes] |
rs2636003 | 0.95[CEU][hapmap];0.85[CHB][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];0.82[LWK][hapmap];0.80[MKK][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs28831807 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs3789600 | 0.82[LWK][hapmap] |
rs971173 | 0.90[JPT][hapmap] |
Symbol | Regulation type |
---|---|
PHTF1 | Proximal transcriptional regulation |
PHTF1 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014