SNP Report
Basic Infomation
| Name | rs12144309 dbSNP |
|---|---|
| Location | chr:1,114315493 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11102678 | 0.83[GIH][hapmap] |
| rs1146185 | 0.81[GIH][hapmap] |
| rs12117799 | 1.00[CEU][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs12119076 | 0.86[ASN][1000 genomes] |
| rs12129076 | 0.86[ASN][1000 genomes] |
| rs1217375 | 0.86[GIH][hapmap] |
| rs1217414 | 0.86[GIH][hapmap] |
| rs1230673 | 0.81[GIH][hapmap] |
| rs1343126 | 1.00[JPT][hapmap] |
| rs13524 | 0.81[GIH][hapmap] |
| rs1624335 | 0.81[GIH][hapmap] |
| rs1743594 | 0.81[GIH][hapmap] |
| rs2040041 | 0.86[GIH][hapmap];0.89[MEX][hapmap] |
| rs2476599 | 0.86[GIH][hapmap] |
| rs2476602 | 0.86[GIH][hapmap] |
| rs2636003 | 0.81[GIH][hapmap] |
| rs2797410 | 0.86[ASN][1000 genomes] |
| rs3789597 | 0.84[GIH][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RSBN1 | Proximal transcriptional regulation |
| PHTF1 | Distal transcriptional regulation |
| RSBN1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014