SNP Report
Name | rs1217414   dbSNP |
---|---|
Location | chr:1,114412667 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs11102678 | 0.81[ASW][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.83[MKK][hapmap] |
rs12144309 | 0.86[GIH][hapmap] |
rs1217375 | 0.81[ASW][hapmap];0.81[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.90[TSI][hapmap];0.83[YRI][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs1217382 | 0.86[CEU][hapmap];0.81[JPT][hapmap] |
rs1217385 | 0.89[LWK][hapmap] |
rs1217393 | 0.86[CEU][hapmap];0.81[JPT][hapmap] |
rs1217397 | 0.81[CEU][hapmap];0.81[JPT][hapmap] |
rs1217401 | 0.86[CEU][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap] |
rs1217403 | 0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs1217406 | 0.82[YRI][hapmap] |
rs1217408 | 0.81[CEU][hapmap];0.90[JPT][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs1217417 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs1217419 | 0.83[YRI][hapmap] |
rs1217423 | 0.80[CEU][hapmap] |
rs1230681 | 0.90[JPT][hapmap] |
rs1235005 | 0.94[LWK][hapmap];0.87[YRI][hapmap] |
rs13524 | 1.00[CHD][hapmap];0.94[GIH][hapmap];0.82[MEX][hapmap] |
rs1746857 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs1746860 | 0.86[CEU][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap] |
rs1935836 | 0.90[JPT][hapmap];0.87[YRI][hapmap] |
rs1970559 | 1.00[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];0.89[MKK][hapmap];0.90[TSI][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs2040041 | 1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.86[MKK][hapmap];0.87[TSI][hapmap] |
rs2185827 | 0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs2476599 | 0.81[ASW][hapmap];0.81[CEU][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.88[MKK][hapmap];0.90[TSI][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs2476602 | 0.81[ASW][hapmap];0.81[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.94[TSI][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs3789597 | 0.85[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.82[MKK][hapmap] |
rs3789598 | 0.86[ASW][hapmap];0.97[LWK][hapmap];0.91[YRI][hapmap] |
rs6665194 | 0.81[LWK][hapmap] |
rs971173 | 0.86[CEU][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap] |
Symbol | Regulation type |
---|---|
RSBN1 | Distal transcriptional regulation |
ENSG00000231128 | Distal transcriptional regulation |
AP4B1 | Distal transcriptional regulation |
DCLRE1B | Distal transcriptional regulation |
AP4B1-AS1 | RNA binding protein mediated regulation |
PTPN22 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014