SNP Report

Basic Infomation

Name	rs1217408 dbSNP
Location	chr:1,114396280
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 44)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11102678	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1146183	0.85[CHB][hapmap]
rs1146184	0.85[CHB][hapmap]
rs1146185	0.84[CHB][hapmap]
rs1217375	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1217378	0.80[AFR][1000 genomes]
rs1217379	0.83[YRI][hapmap]
rs1217382	0.90[JPT][hapmap]
rs1217393	0.91[JPT][hapmap]
rs1217397	0.90[JPT][hapmap]
rs1217401	0.90[JPT][hapmap]
rs1217403	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1217404	0.83[AFR][1000 genomes]
rs1217405	0.90[AFR][1000 genomes]
rs1217406	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs1217414	0.81[CEU][hapmap];0.90[JPT][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1217417	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1217418	0.86[YRI][hapmap];0.83[AFR][1000 genomes]
rs1217419	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs1217420	0.81[AFR][1000 genomes]
rs1217423	0.82[JPT][hapmap]
rs1230681	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1230684	0.89[ASN][1000 genomes]
rs1310182	0.92[AFR][1000 genomes]
rs13524	0.85[CHB][hapmap];0.83[YRI][hapmap]
rs1746857	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1746860	0.90[JPT][hapmap]
rs1935836	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1970559	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2040041	0.94[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2185827	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2476599	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2476600	0.83[YRI][hapmap]
rs2476602	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2476604	0.90[AFR][1000 genomes]
rs2636000	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2797416	0.83[YRI][hapmap]
rs3789597	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3789598	0.91[YRI][hapmap]
rs3789600	0.96[YRI][hapmap]
rs4991898	0.83[AFR][1000 genomes]
rs6537798	0.92[YRI][hapmap];0.80[AFR][1000 genomes]
rs7555634	0.83[YRI][hapmap]
rs971173	0.90[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
AP4B1-AS1	Proximal transcriptional regulation
PTPN22	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)