SNP Report
Basic Infomation
| Name | rs1230684 dbSNP |
|---|---|
| Location | chr:1,114292809 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10776773 | 0.81[EUR][1000 genomes] |
| rs10858015 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11102667 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs11102678 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1146183 | 0.88[EUR][1000 genomes] |
| rs1146184 | 0.88[EUR][1000 genomes] |
| rs1146185 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs1217375 | 0.98[ASN][1000 genomes] |
| rs1217403 | 0.87[ASN][1000 genomes] |
| rs1217408 | 0.89[ASN][1000 genomes] |
| rs1217417 | 0.84[ASN][1000 genomes] |
| rs1230673 | 0.87[EUR][1000 genomes] |
| rs1230681 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs13524 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1743594 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs1746857 | 0.95[ASN][1000 genomes] |
| rs1935836 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1970559 | 0.91[ASN][1000 genomes] |
| rs2040041 | 0.95[ASN][1000 genomes] |
| rs2185827 | 0.87[ASN][1000 genomes] |
| rs2273758 | 0.90[AFR][1000 genomes] |
| rs2476599 | 1.00[ASN][1000 genomes] |
| rs2476602 | 0.89[ASN][1000 genomes] |
| rs2636000 | 0.95[ASN][1000 genomes] |
| rs2636003 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs28831807 | 0.80[AMR][1000 genomes] |
| rs3789597 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7556622 | 0.80[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PHTF1 | Distal transcriptional regulation |
| PHTF1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014