SNP Report
Name | rs2636003   dbSNP |
---|---|
Location | chr:1,114190167 |
Allele | A/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10776773 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs10858006 | 0.88[ASN][1000 genomes] |
rs10858015 | 0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs11102667 | 0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11102678 | 0.87[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.94[TSI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs1146183 | 0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1146184 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1146185 | 0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12026423 | 0.82[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes] |
rs12144309 | 0.81[GIH][hapmap] |
rs1217194 | 0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1217202 | 0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
rs1217212 | 0.82[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs1217224 | 0.81[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs1217225 | 0.80[ASW][hapmap];0.95[YRI][hapmap] |
rs1217229 | 0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
rs1217231 | 0.95[YRI][hapmap] |
rs1217238 | 0.82[ASN][1000 genomes] |
rs1217375 | 0.87[ASW][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.81[MKK][hapmap];0.80[TSI][hapmap] |
rs1217379 | 0.87[ASW][hapmap];0.82[YRI][hapmap] |
rs1217403 | 0.85[CHB][hapmap] |
rs1230673 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1230675 | 0.82[AMR][1000 genomes];0.84[ASN][1000 genomes] |
rs1230681 | 0.95[CEU][hapmap];0.82[EUR][1000 genomes] |
rs1230684 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs1235000 | 0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
rs1237290 | 0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
rs12757859 | 0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1343630 | 0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[ASN][1000 genomes] |
rs13524 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1624335 | 0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1743594 | 0.93[ASW][hapmap];0.91[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1743595 | 0.82[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs1777239 | 0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1935836 | 1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs1970559 | 0.82[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.80[TSI][hapmap] |
rs2040041 | 1.00[CHD][hapmap];0.94[GIH][hapmap] |
rs2185827 | 0.82[CHB][hapmap] |
rs2476599 | 0.87[ASW][hapmap];0.81[CEU][hapmap];0.94[GIH][hapmap];0.81[MKK][hapmap];0.80[TSI][hapmap] |
rs2476600 | 0.87[ASW][hapmap];0.82[YRI][hapmap] |
rs2797416 | 0.87[ASW][hapmap];0.82[YRI][hapmap] |
rs2798137 | 0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs3789597 | 0.95[CEU][hapmap];0.85[CHB][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];0.82[LWK][hapmap];0.80[MKK][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs7518766 | 0.80[ASN][1000 genomes] |
rs7555634 | 0.87[ASW][hapmap];0.82[YRI][hapmap] |
rs9429525 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
MAGI3 | Distal transcriptional regulation |
MAGI3 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014