SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 24)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1217194	0.84[AFR][1000 genomes]
rs1217202	0.96[AFR][1000 genomes]
rs1217212	0.97[AFR][1000 genomes]
rs1217216	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1217222	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1217224	0.98[AFR][1000 genomes]
rs1217225	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1217229	0.95[AFR][1000 genomes]
rs1230673	0.95[YRI][hapmap]
rs1235000	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs1237290	0.98[AFR][1000 genomes]
rs1343629	0.89[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs1343630	0.88[YRI][hapmap]
rs13524	0.95[YRI][hapmap]
rs1624335	1.00[YRI][hapmap]
rs1743594	1.00[YRI][hapmap]
rs1935836	0.84[YRI][hapmap]
rs2636003	0.95[YRI][hapmap]
rs35390985	0.86[ASN][1000 genomes]
rs4259646	0.89[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs6537790	0.89[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs7511816	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7522138	0.81[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7554019	0.89[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
MAGI3	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)