SNP Report

Basic Infomation

Name	rs1217202 dbSNP
Location	chr:1,114124478
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 33)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10776773	0.80[ASN][1000 genomes]
rs10858003	0.83[ASN][1000 genomes]
rs10858006	0.96[ASN][1000 genomes]
rs11102667	0.88[ASN][1000 genomes]
rs1146183	0.86[ASN][1000 genomes]
rs1146184	0.83[ASN][1000 genomes]
rs1146185	0.86[ASN][1000 genomes]
rs12026423	0.92[ASN][1000 genomes]
rs1217194	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1217212	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1217216	0.95[AFR][1000 genomes]
rs1217222	0.85[AFR][1000 genomes]
rs1217224	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1217225	0.96[AFR][1000 genomes]
rs1217229	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1217231	0.96[AFR][1000 genomes]
rs1217238	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1230673	0.88[ASN][1000 genomes]
rs1230675	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1235000	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1237290	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12757859	0.84[ASN][1000 genomes]
rs1343126	0.82[EUR][1000 genomes]
rs1343630	0.94[ASN][1000 genomes]
rs13524	0.86[ASN][1000 genomes]
rs1624335	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1743594	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1743595	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1777239	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2636003	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2798137	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7518766	0.92[ASN][1000 genomes]
rs9429525	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
MTND5P20	Proximal transcriptional regulation
MAGI3	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)