SNP Report
Basic Infomation
| Name | rs10776773 dbSNP |
|---|---|
| Location | chr:1,114220738 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10858006 | 0.80[ASN][1000 genomes] |
| rs10858015 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11102667 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11102678 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs1146183 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1146184 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1146185 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1217194 | 0.84[ASN][1000 genomes] |
| rs1217202 | 0.80[ASN][1000 genomes] |
| rs1217212 | 0.82[ASN][1000 genomes] |
| rs1217224 | 0.82[ASN][1000 genomes] |
| rs1217229 | 0.80[ASN][1000 genomes] |
| rs1230673 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1230684 | 0.81[EUR][1000 genomes] |
| rs1235000 | 0.80[ASN][1000 genomes] |
| rs1237290 | 0.80[ASN][1000 genomes] |
| rs12757859 | 0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs13524 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1624335 | 0.88[ASN][1000 genomes] |
| rs1743594 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1743595 | 0.82[ASN][1000 genomes] |
| rs1777239 | 0.81[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1935836 | 0.82[EUR][1000 genomes] |
| rs2636003 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2798137 | 0.88[ASN][1000 genomes] |
| rs3789597 | 0.83[ASN][1000 genomes] |
| rs9429525 | 0.86[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000238198 | Distal transcriptional regulation |
| LRIG2 | Distal transcriptional regulation |
| MAGI3 | Distal transcriptional regulation |
| MAGI3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014