SNP Report
Basic Infomation
| Name | rs1146185 dbSNP |
|---|---|
| Location | chr:1,114208961 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 44)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10776773 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10858006 | 0.90[ASN][1000 genomes] |
| rs10858015 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11102667 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11102678 | 0.81[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1146183 | 0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1146184 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12026423 | 0.82[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs12144309 | 0.81[GIH][hapmap] |
| rs1217194 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1217202 | 0.86[ASN][1000 genomes] |
| rs1217212 | 0.88[ASN][1000 genomes] |
| rs1217224 | 0.88[ASN][1000 genomes] |
| rs1217229 | 0.86[ASN][1000 genomes] |
| rs1217238 | 0.84[ASN][1000 genomes] |
| rs1217375 | 0.81[ASW][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap] |
| rs1217403 | 0.85[CHB][hapmap] |
| rs1217408 | 0.84[CHB][hapmap] |
| rs1230673 | 0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1230675 | 0.86[ASN][1000 genomes] |
| rs1230681 | 0.85[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs1230684 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs1235000 | 0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.90[ASN][1000 genomes] |
| rs1237290 | 0.86[ASN][1000 genomes] |
| rs12757859 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1343630 | 0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs13524 | 0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1624335 | 0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1743594 | 0.87[ASW][hapmap];0.91[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1743595 | 0.92[ASN][1000 genomes] |
| rs1777239 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1935836 | 1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1970559 | 0.82[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap] |
| rs2040041 | 1.00[CHD][hapmap];0.94[GIH][hapmap] |
| rs2185827 | 0.82[CHB][hapmap] |
| rs2476599 | 0.81[ASW][hapmap];0.94[GIH][hapmap] |
| rs2476602 | 0.81[ASW][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap] |
| rs2488458 | 0.80[ASW][hapmap] |
| rs2636003 | 0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2798137 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3789597 | 0.85[CEU][hapmap];0.84[CHB][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7518766 | 0.82[ASN][1000 genomes] |
| rs7522138 | 0.93[ASW][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs9429525 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MAGI3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 9)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014