SNP Report

Basic Infomation

Name	rs1343630 dbSNP
Location	chr:1,114105855
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 27)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10858003	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10858006	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11102667	0.83[ASN][1000 genomes]
rs1146183	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1146184	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1146185	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12026423	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1217194	0.83[ASN][1000 genomes]
rs1217202	0.94[ASN][1000 genomes]
rs1217212	0.92[ASN][1000 genomes]
rs1217224	0.92[ASN][1000 genomes]
rs1217225	0.86[YRI][hapmap]
rs1217229	0.94[ASN][1000 genomes]
rs1217231	0.88[YRI][hapmap]
rs1217238	0.92[ASN][1000 genomes]
rs1230673	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[ASN][1000 genomes]
rs1235000	0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[ASN][1000 genomes]
rs1237290	0.94[ASN][1000 genomes]
rs13524	0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.81[ASN][1000 genomes]
rs1624335	0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[ASN][1000 genomes]
rs1743594	1.00[JPT][hapmap];0.87[YRI][hapmap];0.83[ASN][1000 genomes]
rs1743595	0.84[ASN][1000 genomes]
rs1777239	0.88[ASN][1000 genomes]
rs2636003	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[ASN][1000 genomes]
rs2798137	0.86[ASN][1000 genomes]
rs7518766	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9429525	0.88[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
MAGI3	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)