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rVarBase
SNP Report
Basic Infomation
Name
rs10858003  
dbSNP
Location
chr:1,114089547
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10858006
0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12026423
0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1217202
0.83[ASN][1000 genomes]
rs1217212
0.81[ASN][1000 genomes]
rs1217224
0.81[ASN][1000 genomes]
rs1217229
0.83[ASN][1000 genomes]
rs1217238
0.88[ASN][1000 genomes]
rs1235000
0.83[ASN][1000 genomes]
rs1237290
0.83[ASN][1000 genomes]
rs1343630
0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1743595
0.81[ASN][1000 genomes]
rs7518766
0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
MAGI3
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)