SNP Report
Name | rs1217225   dbSNP |
---|---|
Location | chr:1,114139991 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs11102678 | 0.81[ASW][hapmap] |
rs1217194 | 0.84[AFR][1000 genomes] |
rs1217202 | 0.96[AFR][1000 genomes] |
rs1217212 | 0.97[AFR][1000 genomes] |
rs1217216 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1217222 | 0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1217224 | 0.98[AFR][1000 genomes] |
rs1217229 | 0.95[AFR][1000 genomes] |
rs1217231 | 1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1230673 | 0.80[ASW][hapmap];0.95[YRI][hapmap] |
rs1235000 | 1.00[ASW][hapmap];0.94[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes] |
rs1237290 | 0.98[AFR][1000 genomes] |
rs1343629 | 0.94[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.81[TSI][hapmap];0.91[ASN][1000 genomes] |
rs1343630 | 0.86[YRI][hapmap] |
rs13524 | 0.87[ASW][hapmap];0.95[YRI][hapmap] |
rs1624335 | 0.87[ASW][hapmap];1.00[YRI][hapmap] |
rs17359281 | 0.81[CHD][hapmap] |
rs1743594 | 0.87[ASW][hapmap];1.00[YRI][hapmap] |
rs1935836 | 0.82[YRI][hapmap] |
rs2636003 | 0.80[ASW][hapmap];0.95[YRI][hapmap] |
rs35390985 | 0.87[ASN][1000 genomes] |
rs4259646 | 0.94[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.81[MKK][hapmap];0.91[ASN][1000 genomes] |
rs4838993 | 0.81[CHD][hapmap] |
rs4838994 | 0.81[CHD][hapmap] |
rs4839331 | 0.81[CHD][hapmap] |
rs4839333 | 0.81[CHD][hapmap] |
rs6537790 | 0.94[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.81[MKK][hapmap];0.91[ASN][1000 genomes] |
rs7511816 | 0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs7522138 | 0.81[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs7554019 | 0.94[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.81[MKK][hapmap];0.87[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
MAGI3 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014