SNP Report
Name | rs4839333   dbSNP |
---|---|
Location | chr:1,114219161 |
Allele | A/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs11582409 | 0.91[CHB][hapmap] |
rs12144215 | 0.93[ASN][1000 genomes] |
rs1217225 | 0.81[CHD][hapmap] |
rs1419231 | 0.87[ASN][1000 genomes] |
rs17031795 | 0.85[AMR][1000 genomes] |
rs17274627 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17359281 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs17359378 | 0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17359468 | 0.85[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rs17461918 | 0.87[CHB][hapmap];0.85[CHD][hapmap];0.81[GIH][hapmap];0.93[JPT][hapmap] |
rs17508449 | 0.87[CHB][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];0.93[JPT][hapmap] |
rs2146018 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs3195954 | 0.88[CHB][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap] |
rs3761934 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs3765598 | 0.88[CHB][hapmap];0.81[JPT][hapmap] |
rs3789604 | 0.84[CHB][hapmap];0.86[JPT][hapmap] |
rs3789608 | 0.82[CHB][hapmap] |
rs3811021 | 0.88[CHB][hapmap];0.81[JPT][hapmap] |
rs3827733 | 0.88[CHB][hapmap];0.81[JPT][hapmap] |
rs41352847 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4589108 | 0.85[AMR][1000 genomes] |
rs4838993 | 0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];0.90[ASN][1000 genomes] |
rs4838994 | 0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];0.91[ASN][1000 genomes] |
rs4839000 | 0.85[CEU][hapmap];0.88[CHB][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.81[TSI][hapmap] |
rs4839327 | 0.82[ASN][1000 genomes] |
rs4839329 | 0.90[ASN][1000 genomes] |
rs4839330 | 0.89[ASN][1000 genomes] |
rs4839331 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.93[ASN][1000 genomes] |
rs4839332 | 0.92[ASN][1000 genomes] |
rs6678422 | 0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6699022 | 0.82[ASN][1000 genomes] |
rs7514649 | 0.85[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];0.92[JPT][hapmap] |
Symbol | Regulation type |
---|---|
SLC16A1 | Distal transcriptional regulation |
ENSG00000226419 | Distal transcriptional regulation |
MAGI3 | Distal transcriptional regulation |
MAGI3 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014