SNP Report
Basic Infomation
| Name | rs4839000 dbSNP |
|---|---|
| Location | chr:1,114280135 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 36)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11582409 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs11584821 | 0.81[JPT][hapmap] |
| rs17031795 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs17274627 | 0.92[CEU][hapmap];0.88[CHB][hapmap];0.80[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs17359281 | 1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs17359378 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs17359468 | 0.94[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs17461918 | 0.86[CEU][hapmap];1.00[GIH][hapmap];0.80[TSI][hapmap] |
| rs17463292 | 0.91[ASN][1000 genomes] |
| rs17508449 | 0.86[CEU][hapmap];1.00[GIH][hapmap];0.80[TSI][hapmap] |
| rs17509844 | 0.89[ASN][1000 genomes] |
| rs17510162 | 0.82[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs2146018 | 0.82[EUR][1000 genomes] |
| rs3195954 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[ASN][1000 genomes] |
| rs34122108 | 0.89[ASN][1000 genomes] |
| rs35173468 | 0.89[ASN][1000 genomes] |
| rs3761934 | 0.82[EUR][1000 genomes] |
| rs3761935 | 0.91[ASN][1000 genomes] |
| rs3765598 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs3789604 | 0.86[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs3789608 | 0.94[CHB][hapmap];0.89[ASN][1000 genomes] |
| rs3811021 | 1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs3827733 | 1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs41352847 | 0.82[EUR][1000 genomes] |
| rs4393155 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4589108 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4838993 | 1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap] |
| rs4838994 | 1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap] |
| rs4839331 | 1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap] |
| rs4839333 | 0.85[CEU][hapmap];0.88[CHB][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.81[TSI][hapmap] |
| rs4839341 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4839346 | 0.89[ASN][1000 genomes] |
| rs55646484 | 0.89[ASN][1000 genomes] |
| rs55940960 | 0.91[ASN][1000 genomes] |
| rs55951516 | 0.91[ASN][1000 genomes] |
| rs6658523 | 0.89[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RSBN1 | Distal transcriptional regulation |
| ENSG00000231128 | Distal transcriptional regulation |
| PHTF1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014