SNP Report
Basic Infomation
| Name | rs4393155 dbSNP |
|---|---|
| Location | chr:1,114274247 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 30)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11582409 | 0.86[ASN][1000 genomes] |
| rs17031795 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs17274627 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs17359281 | 0.83[EUR][1000 genomes] |
| rs17359378 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs17359468 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs17463292 | 0.88[ASN][1000 genomes] |
| rs17509844 | 0.86[ASN][1000 genomes] |
| rs17510162 | 0.80[ASN][1000 genomes] |
| rs2146018 | 0.85[EUR][1000 genomes] |
| rs3195954 | 0.88[ASN][1000 genomes] |
| rs34122108 | 0.86[ASN][1000 genomes] |
| rs35173468 | 0.86[ASN][1000 genomes] |
| rs3761934 | 0.85[EUR][1000 genomes] |
| rs3761935 | 0.88[ASN][1000 genomes] |
| rs3765598 | 0.86[ASN][1000 genomes] |
| rs3789604 | 0.88[ASN][1000 genomes] |
| rs3789608 | 0.86[ASN][1000 genomes] |
| rs3811021 | 0.88[ASN][1000 genomes] |
| rs3827733 | 0.87[ASN][1000 genomes] |
| rs41352847 | 0.85[EUR][1000 genomes] |
| rs4589108 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4839000 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4839341 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4839346 | 0.86[ASN][1000 genomes] |
| rs55646484 | 0.86[ASN][1000 genomes] |
| rs55940960 | 0.88[ASN][1000 genomes] |
| rs55951516 | 0.88[ASN][1000 genomes] |
| rs6658523 | 0.86[ASN][1000 genomes] |
| rs6678422 | 0.82[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PHTF1 | Distal transcriptional regulation |
| RSBN1 | Distal transcriptional regulation |
| ENSG00000231128 | Distal transcriptional regulation |
| PHTF1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014