SNP Report
Basic Infomation
| Name | rs3195954 dbSNP |
|---|---|
| Location | chr:1,114354654 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11582409 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11584821 | 0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs17031795 | 0.86[ASN][1000 genomes] |
| rs17274627 | 0.88[CHB][hapmap];0.80[JPT][hapmap] |
| rs17359281 | 0.88[CHB][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap] |
| rs17463292 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17464525 | 0.85[GIH][hapmap] |
| rs17509844 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs17510162 | 0.82[CHB][hapmap];0.87[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs34122108 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs35173468 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3761935 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3765598 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3789604 | 0.85[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3789608 | 0.94[CHB][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3811021 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3827733 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4393155 | 0.88[ASN][1000 genomes] |
| rs4589108 | 0.86[ASN][1000 genomes] |
| rs4839000 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[ASN][1000 genomes] |
| rs4839331 | 0.88[CHB][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap] |
| rs4839333 | 0.88[CHB][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap] |
| rs4839341 | 0.86[ASN][1000 genomes] |
| rs4839346 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs55646484 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs55940960 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55951516 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6658523 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000231128 | Proximal transcriptional regulation |
| SRSF6 | Distal transcriptional regulation |
| SNRPG | Distal transcriptional regulation |
| HIPK1 | Distal transcriptional regulation |
| ENSG00000235527 | Distal transcriptional regulation |
| AP4B1 | Distal transcriptional regulation |
| DCLRE1B | Distal transcriptional regulation |
| PHTF1 | Distal transcriptional regulation |
| RSBN1 | Distal transcriptional regulation |
| ENSG00000231128 | Distal transcriptional regulation |
| APPBP2 | Distal transcriptional regulation |
| ENSG00000259349 | Distal transcriptional regulation |
| COPS5 | Distal transcriptional regulation |
| VAV3 | Distal transcriptional regulation |
| OLFML3 | Distal transcriptional regulation |
| CSDE1 | Distal transcriptional regulation |
| TRIM33 | Distal transcriptional regulation |
| FIBCD1 | Distal transcriptional regulation |
| ENSG00000267280 | Distal transcriptional regulation |
| C17orf82 | Distal transcriptional regulation |
| ENSG00000267637 | Distal transcriptional regulation |
| PARD6B | Distal transcriptional regulation |
| ENSG00000201524 | Distal transcriptional regulation |
| AP4B1-AS1 | Distal transcriptional regulation |
| RSBN1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014