SNP Report
Basic Infomation
| Name | rs17464525 dbSNP |
|---|---|
| Location | chr:1,114443899 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10745340 | 1.00[YRI][hapmap] |
| rs10776775 | 1.00[YRI][hapmap] |
| rs10858022 | 1.00[YRI][hapmap] |
| rs11582409 | 0.85[YRI][hapmap] |
| rs11584821 | 0.85[YRI][hapmap] |
| rs1217382 | 0.87[YRI][hapmap] |
| rs1217391 | 1.00[YRI][hapmap] |
| rs1217392 | 1.00[YRI][hapmap] |
| rs17510162 | 0.85[YRI][hapmap] |
| rs2296176 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs3195954 | 0.85[GIH][hapmap] |
| rs3765598 | 0.85[GIH][hapmap];0.85[YRI][hapmap] |
| rs3789613 | 1.00[YRI][hapmap] |
| rs3811021 | 0.85[GIH][hapmap];0.85[YRI][hapmap] |
| rs3827733 | 0.85[GIH][hapmap];0.85[YRI][hapmap] |
| rs6661817 | 1.00[YRI][hapmap] |
| rs6700802 | 0.85[YRI][hapmap] |
| rs7523862 | 1.00[YRI][hapmap] |
| rs7524200 | 1.00[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DCLRE1B | Proximal transcriptional regulation |
| AP4B1 | Proximal transcriptional regulation |
| HIPK1 | Distal transcriptional regulation |
| ENSG00000235527 | Distal transcriptional regulation |
| AP4B1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014