SNP Report
Basic Infomation
| Name | rs6700802 dbSNP |
|---|---|
| Location | chr:1,114391052 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 40)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10745340 | 0.85[YRI][hapmap] |
| rs10776775 | 0.85[YRI][hapmap] |
| rs10858022 | 0.85[YRI][hapmap] |
| rs11582409 | 1.00[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs11584821 | 1.00[YRI][hapmap] |
| rs1217391 | 0.85[YRI][hapmap] |
| rs1217392 | 0.85[YRI][hapmap] |
| rs17463292 | 0.82[AFR][1000 genomes] |
| rs17464525 | 0.85[YRI][hapmap] |
| rs17509844 | 0.82[AFR][1000 genomes] |
| rs17510162 | 1.00[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs35173468 | 0.82[AFR][1000 genomes] |
| rs35955172 | 1.00[AMR][1000 genomes] |
| rs3761935 | 0.82[AFR][1000 genomes] |
| rs3765598 | 1.00[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs3789604 | 0.82[AFR][1000 genomes] |
| rs3789608 | 0.85[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs3789613 | 0.85[YRI][hapmap] |
| rs3811021 | 1.00[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs3827733 | 1.00[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs4839346 | 0.82[AFR][1000 genomes] |
| rs55646484 | 0.82[AFR][1000 genomes] |
| rs55940960 | 0.82[AFR][1000 genomes] |
| rs61742852 | 1.00[AMR][1000 genomes] |
| rs6537791 | 1.00[AMR][1000 genomes] |
| rs6537796 | 0.85[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6658523 | 0.82[AFR][1000 genomes] |
| rs6661817 | 0.85[YRI][hapmap] |
| rs6673379 | 1.00[AMR][1000 genomes] |
| rs6693766 | 1.00[AMR][1000 genomes] |
| rs6694929 | 1.00[AMR][1000 genomes] |
| rs7512645 | 1.00[AMR][1000 genomes] |
| rs7519133 | 1.00[AMR][1000 genomes] |
| rs7523862 | 0.85[YRI][hapmap] |
| rs7524200 | 0.82[YRI][hapmap] |
| rs7527562 | 1.00[AMR][1000 genomes] |
| rs7545980 | 1.00[AMR][1000 genomes] |
| rs7547536 | 1.00[AMR][1000 genomes] |
| rs7554422 | 1.00[AMR][1000 genomes] |
| rs7556589 | 1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| HIPK1 | Distal transcriptional regulation |
| ENSG00000235527 | Distal transcriptional regulation |
| PTPN22 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014