SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 25)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11577235	0.86[AFR][1000 genomes]
rs11579386	1.00[ASW][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap]
rs17031640	1.00[LWK][hapmap];0.97[MKK][hapmap]
rs17031645	1.00[LWK][hapmap];0.97[MKK][hapmap]
rs17031648	1.00[LWK][hapmap];0.91[MKK][hapmap]
rs35955172	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3827733	1.00[ASW][hapmap]
rs61742852	1.00[AMR][1000 genomes]
rs6537791	1.00[AMR][1000 genomes]
rs6537796	1.00[AMR][1000 genomes]
rs6663791	0.80[AFR][1000 genomes]
rs6671518	1.00[ASW][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];0.89[YRI][hapmap]
rs6673379	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6693766	1.00[AMR][1000 genomes]
rs6694929	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6700802	1.00[AMR][1000 genomes]
rs7512645	1.00[AMR][1000 genomes]
rs7519133	1.00[AMR][1000 genomes]
rs7527562	1.00[AMR][1000 genomes]
rs7528311	0.97[MKK][hapmap]
rs7547536	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7553181	0.86[AFR][1000 genomes]
rs7554422	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7555259	1.00[ASW][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes]
rs7556589	1.00[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
MAGI3	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 2)

eQTL related gene	Source
LRRC32	SCAN
EZR	seeQTL