SNP Report
Basic Infomation
| Name | rs7554422 dbSNP |
|---|---|
| Location | chr:1,114155383 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11577235 | 0.89[AFR][1000 genomes] |
| rs11579386 | 1.00[ASW][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap] |
| rs17031640 | 1.00[LWK][hapmap];0.97[MKK][hapmap] |
| rs17031645 | 1.00[LWK][hapmap];0.97[MKK][hapmap] |
| rs17031648 | 1.00[LWK][hapmap];0.91[MKK][hapmap] |
| rs35955172 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs3827733 | 1.00[ASW][hapmap] |
| rs61742852 | 1.00[AMR][1000 genomes] |
| rs6537791 | 1.00[AMR][1000 genomes] |
| rs6537796 | 0.87[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs6663791 | 0.83[AFR][1000 genomes] |
| rs6671518 | 1.00[ASW][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs6673379 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6693766 | 1.00[AMR][1000 genomes] |
| rs6694929 | 1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6700802 | 1.00[AMR][1000 genomes] |
| rs7512645 | 1.00[AMR][1000 genomes] |
| rs7519133 | 1.00[AMR][1000 genomes] |
| rs7527562 | 1.00[AMR][1000 genomes] |
| rs7528311 | 0.97[MKK][hapmap] |
| rs7545980 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7547536 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7553181 | 0.89[AFR][1000 genomes] |
| rs7555259 | 1.00[ASW][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes] |
| rs7556589 | 1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MAGI3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| EZR | seeQTL |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014