SNP Report
Name | rs6694929   dbSNP |
---|---|
Location | chr:1,114160978 |
Allele | G/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs11579386 | 1.00[ASW][hapmap];0.97[MKK][hapmap] |
rs17031640 | 0.97[MKK][hapmap] |
rs17031645 | 0.97[MKK][hapmap] |
rs17031648 | 0.91[MKK][hapmap] |
rs35955172 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs3811021 | 1.00[ASW][hapmap] |
rs3827733 | 1.00[ASW][hapmap] |
rs61742852 | 1.00[AMR][1000 genomes] |
rs6537791 | 1.00[AMR][1000 genomes] |
rs6537796 | 1.00[AMR][1000 genomes] |
rs6671518 | 1.00[ASW][hapmap];0.97[MKK][hapmap];0.89[YRI][hapmap] |
rs6673379 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6693766 | 1.00[AMR][1000 genomes] |
rs6700802 | 1.00[AMR][1000 genomes] |
rs7512645 | 1.00[AMR][1000 genomes] |
rs7519133 | 1.00[AMR][1000 genomes] |
rs7527562 | 1.00[AMR][1000 genomes] |
rs7528311 | 0.97[MKK][hapmap] |
rs7545980 | 1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs7547536 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs7554422 | 1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs7555259 | 1.00[ASW][hapmap];0.97[MKK][hapmap];0.89[YRI][hapmap] |
rs7556589 | 1.00[AMR][1000 genomes] |
Symbol | Regulation type |
---|---|
MAGI3 | RNA binding protein mediated regulation |
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL related gene | Source |
---|---|
EZR | seeQTL |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014