SNP Report
Name | rs3811021   dbSNP |
---|---|
Location | chr:1,114356663 |
Allele | A/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10745340 | 0.85[YRI][hapmap] |
rs10776775 | 0.85[YRI][hapmap] |
rs10858022 | 0.85[YRI][hapmap] |
rs11582409 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs11584821 | 0.81[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs1217391 | 0.85[YRI][hapmap] |
rs1217392 | 0.85[YRI][hapmap] |
rs17031795 | 0.86[ASN][1000 genomes] |
rs17274627 | 0.88[CHB][hapmap];0.80[JPT][hapmap] |
rs17359281 | 0.88[CHB][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap] |
rs17463292 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17464525 | 0.85[GIH][hapmap];0.85[YRI][hapmap] |
rs17509844 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs17510162 | 0.82[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs3195954 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34122108 | 0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs35173468 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs3761935 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3765598 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs3789604 | 0.85[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3789608 | 0.94[CHB][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs3789613 | 0.85[YRI][hapmap] |
rs3827733 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4393155 | 0.88[ASN][1000 genomes] |
rs4589108 | 0.86[ASN][1000 genomes] |
rs4839000 | 1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
rs4839331 | 0.88[CHB][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap] |
rs4839333 | 0.88[CHB][hapmap];0.81[JPT][hapmap] |
rs4839341 | 0.86[ASN][1000 genomes] |
rs4839346 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs55646484 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs55940960 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55951516 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6537796 | 0.85[YRI][hapmap] |
rs6658523 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6661817 | 0.85[YRI][hapmap] |
rs6694929 | 1.00[ASW][hapmap] |
rs6700802 | 1.00[YRI][hapmap];0.82[AFR][1000 genomes] |
rs7523862 | 0.85[YRI][hapmap] |
rs7524200 | 0.82[YRI][hapmap] |
Symbol | Regulation type |
---|---|
RSBN1 | Proximal transcriptional regulation |
PTPN22 | Proximal transcriptional regulation |
SLC16A1 | Distal transcriptional regulation |
AP4B1 | Distal transcriptional regulation |
DCLRE1B | Distal transcriptional regulation |
RSBN1 | Distal transcriptional regulation |
ENSG00000231128 | Distal transcriptional regulation |
HIPK1 | Distal transcriptional regulation |
ENSG00000235527 | Distal transcriptional regulation |
PHTF1 | Distal transcriptional regulation |
CSDE1 | Distal transcriptional regulation |
ENSG00000231128 | RNA binding protein mediated regulation |
PTPN22 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014