SNP Report
Name | rs10858022   dbSNP |
---|---|
Location | chr:1,114446341 |
Allele | A/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10745340 | 1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10776775 | 1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10858023 | 1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs11102701 | 0.81[AFR][1000 genomes] |
rs11582409 | 0.85[YRI][hapmap] |
rs11584821 | 0.85[YRI][hapmap] |
rs1217382 | 0.87[YRI][hapmap] |
rs1217391 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
rs1217392 | 1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17464525 | 1.00[YRI][hapmap] |
rs17510162 | 0.85[YRI][hapmap] |
rs3765598 | 0.85[YRI][hapmap] |
rs3789613 | 1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs3811021 | 0.85[YRI][hapmap] |
rs3827733 | 0.85[YRI][hapmap] |
rs6661817 | 1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6700802 | 0.85[YRI][hapmap] |
rs7523862 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7524200 | 1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
DCLRE1B | Proximal transcriptional regulation |
AP4B1 | Proximal transcriptional regulation |
RSBN1 | Distal transcriptional regulation |
ENSG00000231128 | Distal transcriptional regulation |
PHTF1 | Distal transcriptional regulation |
HIPK1 | Distal transcriptional regulation |
ENSG00000235527 | Distal transcriptional regulation |
TPM4 | Distal transcriptional regulation |
PTPN22 | Distal transcriptional regulation |
TRIM33 | Distal transcriptional regulation |
ENSG00000204054 | Distal transcriptional regulation |
UBTF | Distal transcriptional regulation |
AP4B1 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014