SNP Report
Basic Infomation
| Name | rs11102701 dbSNP |
|---|---|
| Location | chr:1,114449829 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10745340 | 0.81[AFR][1000 genomes] |
| rs10776775 | 0.81[AFR][1000 genomes] |
| rs10858022 | 0.81[AFR][1000 genomes] |
| rs10858023 | 0.81[AFR][1000 genomes] |
| rs11102702 | 0.84[EUR][1000 genomes] |
| rs11552449 | 0.91[EUR][1000 genomes] |
| rs1217392 | 0.81[AFR][1000 genomes] |
| rs2358994 | 0.88[EUR][1000 genomes] |
| rs2358995 | 0.88[EUR][1000 genomes] |
| rs3761936 | 0.90[EUR][1000 genomes] |
| rs3789613 | 0.81[AFR][1000 genomes] |
| rs6661817 | 0.81[AFR][1000 genomes] |
| rs7513707 | 0.91[EUR][1000 genomes] |
| rs7523862 | 0.81[AFR][1000 genomes] |
| rs7524200 | 0.81[AFR][1000 genomes] |
| rs7547478 | 0.87[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| AP4B1 | Proximal transcriptional regulation |
| HIPK1 | Distal transcriptional regulation |
| ENSG00000235527 | Distal transcriptional regulation |
| RSBN1 | Distal transcriptional regulation |
| ENSG00000231128 | Distal transcriptional regulation |
| ZMYM2 | Distal transcriptional regulation |
| DCLRE1B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014