SNP Report
Name | rs3761936   dbSNP |
---|---|
Location | chr:1,114449662 |
Allele | T/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs11102694 | 0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs11102701 | 0.90[EUR][1000 genomes] |
rs11102702 | 0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs11552449 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs12046289 | 0.85[AMR][1000 genomes] |
rs1217413 | 1.00[ASW][hapmap] |
rs2358816 | 0.84[CHB][hapmap] |
rs2358994 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs2358995 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs2359167 | 1.00[ASW][hapmap] |
rs2488457 | 1.00[ASW][hapmap] |
rs7513707 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7547478 | 0.90[CHB][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
AP4B1 | Proximal transcriptional regulation |
HIPK1 | Distal transcriptional regulation |
ENSG00000235527 | Distal transcriptional regulation |
RSBN1 | Distal transcriptional regulation |
ENSG00000231128 | Distal transcriptional regulation |
ZMYM2 | Distal transcriptional regulation |
DCLRE1B | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014