SNP Report
Name | rs2358816   dbSNP |
---|---|
Location | chr:1,114419368 |
Allele | A/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10858017 | 0.82[EUR][1000 genomes] |
rs10858018 | 0.81[EUR][1000 genomes] |
rs10858019 | 0.82[EUR][1000 genomes] |
rs11102691 | 0.89[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes] |
rs12041547 | 0.95[CEU][hapmap];0.90[EUR][1000 genomes] |
rs12044534 | 0.82[EUR][1000 genomes] |
rs12061482 | 0.82[EUR][1000 genomes] |
rs12063216 | 0.82[EUR][1000 genomes] |
rs1217376 | 0.83[EUR][1000 genomes] |
rs1217377 | 0.84[EUR][1000 genomes] |
rs1217380 | 0.84[EUR][1000 genomes] |
rs1217388 | 0.84[EUR][1000 genomes] |
rs1217389 | 0.84[EUR][1000 genomes] |
rs1217395 | 0.84[EUR][1000 genomes] |
rs1217396 | 0.84[EUR][1000 genomes] |
rs1217407 | 0.80[JPT][hapmap];0.85[EUR][1000 genomes] |
rs1217410 | 0.81[JPT][hapmap];0.85[EUR][1000 genomes] |
rs1217412 | 0.84[EUR][1000 genomes] |
rs1217413 | 0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs1217416 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs1217421 | 0.84[EUR][1000 genomes] |
rs1230637 | 0.87[EUR][1000 genomes] |
rs1230638 | 0.81[EUR][1000 genomes] |
rs1230639 | 0.81[EUR][1000 genomes] |
rs1230640 | 0.80[EUR][1000 genomes] |
rs1230645 | 0.80[EUR][1000 genomes] |
rs1230646 | 0.88[EUR][1000 genomes] |
rs1230656 | 0.82[EUR][1000 genomes] |
rs1230661 | 0.82[EUR][1000 genomes] |
rs1230678 | 0.82[EUR][1000 genomes] |
rs1230679 | 0.82[EUR][1000 genomes] |
rs1230685 | 0.82[EUR][1000 genomes] |
rs1237682 | 0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs12566340 | 0.94[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs1599971 | 0.84[EUR][1000 genomes] |
rs1775754 | 0.84[EUR][1000 genomes] |
rs1981319 | 0.80[EUR][1000 genomes] |
rs2093436 | 0.80[EUR][1000 genomes] |
rs2243471 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs2358994 | 0.84[CHB][hapmap] |
rs2359167 | 0.94[CEU][hapmap];0.90[EUR][1000 genomes] |
rs2488457 | 1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs2488458 | 0.81[JPT][hapmap];0.85[EUR][1000 genomes] |
rs2636013 | 0.80[EUR][1000 genomes] |
rs2636014 | 0.80[EUR][1000 genomes] |
rs2797408 | 0.82[EUR][1000 genomes] |
rs2797409 | 0.82[EUR][1000 genomes] |
rs2797412 | 0.82[EUR][1000 genomes] |
rs36052758 | 1.00[YRI][hapmap] |
rs3761936 | 0.84[CHB][hapmap] |
rs3789612 | 1.00[YRI][hapmap] |
rs4145859 | 0.95[CEU][hapmap];0.90[EUR][1000 genomes] |
rs4423005 | 0.80[EUR][1000 genomes] |
rs4565712 | 0.82[EUR][1000 genomes] |
rs4600045 | 0.80[EUR][1000 genomes] |
rs61817589 | 0.90[EUR][1000 genomes] |
rs6537795 | 0.82[EUR][1000 genomes] |
rs6663679 | 0.80[EUR][1000 genomes] |
rs7529353 | 0.94[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs7553188 | 0.80[EUR][1000 genomes] |
Symbol | Regulation type |
---|---|
PTPN22 | Proximal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014