SNP Report

Basic Infomation

Name	rs2358816 dbSNP
Location	chr:1,114419368
Allele	A/T

LD-proxy of rSNPs(r²>0.8) (count: 60)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10858017	0.82[EUR][1000 genomes]
rs10858018	0.81[EUR][1000 genomes]
rs10858019	0.82[EUR][1000 genomes]
rs11102691	0.89[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes]
rs12041547	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs12044534	0.82[EUR][1000 genomes]
rs12061482	0.82[EUR][1000 genomes]
rs12063216	0.82[EUR][1000 genomes]
rs1217376	0.83[EUR][1000 genomes]
rs1217377	0.84[EUR][1000 genomes]
rs1217380	0.84[EUR][1000 genomes]
rs1217388	0.84[EUR][1000 genomes]
rs1217389	0.84[EUR][1000 genomes]
rs1217395	0.84[EUR][1000 genomes]
rs1217396	0.84[EUR][1000 genomes]
rs1217407	0.80[JPT][hapmap];0.85[EUR][1000 genomes]
rs1217410	0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs1217412	0.84[EUR][1000 genomes]
rs1217413	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1217416	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1217421	0.84[EUR][1000 genomes]
rs1230637	0.87[EUR][1000 genomes]
rs1230638	0.81[EUR][1000 genomes]
rs1230639	0.81[EUR][1000 genomes]
rs1230640	0.80[EUR][1000 genomes]
rs1230645	0.80[EUR][1000 genomes]
rs1230646	0.88[EUR][1000 genomes]
rs1230656	0.82[EUR][1000 genomes]
rs1230661	0.82[EUR][1000 genomes]
rs1230678	0.82[EUR][1000 genomes]
rs1230679	0.82[EUR][1000 genomes]
rs1230685	0.82[EUR][1000 genomes]
rs1237682	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12566340	0.94[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1599971	0.84[EUR][1000 genomes]
rs1775754	0.84[EUR][1000 genomes]
rs1981319	0.80[EUR][1000 genomes]
rs2093436	0.80[EUR][1000 genomes]
rs2243471	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2358994	0.84[CHB][hapmap]
rs2359167	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs2488457	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2488458	0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs2636013	0.80[EUR][1000 genomes]
rs2636014	0.80[EUR][1000 genomes]
rs2797408	0.82[EUR][1000 genomes]
rs2797409	0.82[EUR][1000 genomes]
rs2797412	0.82[EUR][1000 genomes]
rs36052758	1.00[YRI][hapmap]
rs3761936	0.84[CHB][hapmap]
rs3789612	1.00[YRI][hapmap]
rs4145859	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs4423005	0.80[EUR][1000 genomes]
rs4565712	0.82[EUR][1000 genomes]
rs4600045	0.80[EUR][1000 genomes]
rs61817589	0.90[EUR][1000 genomes]
rs6537795	0.82[EUR][1000 genomes]
rs6663679	0.80[EUR][1000 genomes]
rs7529353	0.94[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7553188	0.80[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
PTPN22	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)