SNP Report
Name | rs1237682   dbSNP |
---|---|
Location | chr:1,114364104 |
Allele | T/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10858017 | 0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs10858018 | 0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs10858019 | 0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs10858021 | 0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs11102691 | 0.80[CHB][hapmap];0.86[JPT][hapmap] |
rs1146182 | 0.82[CEU][hapmap];0.85[CHB][hapmap] |
rs1146187 | 0.82[CEU][hapmap];0.86[CHB][hapmap] |
rs12041547 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs12044534 | 0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs12061482 | 0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs12063216 | 0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs1217376 | 0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs1217377 | 0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs1217380 | 0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs1217386 | 0.84[ASN][1000 genomes] |
rs1217388 | 0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs1217389 | 0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs1217395 | 0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs1217396 | 0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs1217407 | 0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs1217410 | 0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs1217412 | 0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs1217413 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1217415 | 0.86[CHB][hapmap] |
rs1217416 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1217421 | 0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs1230637 | 0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs1230638 | 0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs1230639 | 0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs1230640 | 0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes] |
rs1230642 | 0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs1230645 | 0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes] |
rs1230646 | 0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs1230647 | 0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes] |
rs1230649 | 0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes] |
rs1230655 | 0.80[EUR][1000 genomes] |
rs1230656 | 0.90[EUR][1000 genomes] |
rs1230658 | 0.82[CEU][hapmap];0.86[CHB][hapmap];0.81[EUR][1000 genomes] |
rs1230659 | 0.82[CEU][hapmap];0.86[CHB][hapmap];0.81[EUR][1000 genomes] |
rs1230661 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[EUR][1000 genomes] |
rs1230678 | 0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs1230679 | 0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs1230683 | 0.81[EUR][1000 genomes] |
rs1230685 | 0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs12565589 | 0.82[CEU][hapmap];0.81[CHB][hapmap] |
rs12566340 | 0.85[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes] |
rs1599971 | 0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs1743605 | 0.82[CEU][hapmap];0.86[CHB][hapmap] |
rs1746853 | 0.82[CHB][hapmap] |
rs1775754 | 0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs1777234 | 0.83[CEU][hapmap] |
rs1777237 | 0.82[CEU][hapmap];0.86[CHB][hapmap] |
rs1777241 | 0.82[CEU][hapmap];0.81[CHB][hapmap] |
rs1935838 | 0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs1936398 | 0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes] |
rs1981319 | 0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes] |
rs2093436 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes] |
rs2243471 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs2295853 | 0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes] |
rs2358816 | 0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs2359167 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs2488457 | 0.95[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs2488458 | 0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs2636013 | 0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes] |
rs2636014 | 0.86[EUR][1000 genomes] |
rs2797408 | 0.88[EUR][1000 genomes] |
rs2797409 | 0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs2797412 | 0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs4145859 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs4423005 | 0.86[EUR][1000 genomes] |
rs4565712 | 0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs4600045 | 0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes] |
rs4838997 | 0.81[EUR][1000 genomes] |
rs61817589 | 0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6537792 | 0.83[CEU][hapmap];0.82[CHB][hapmap];0.81[EUR][1000 genomes] |
rs6537795 | 0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6663679 | 0.86[EUR][1000 genomes] |
rs6698586 | 0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes] |
rs7526209 | 0.81[ASN][1000 genomes] |
rs7529353 | 0.85[CHB][hapmap];0.86[JPT][hapmap];0.85[EUR][1000 genomes] |
rs7553188 | 0.86[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs9429730 | 0.81[CEU][hapmap];0.85[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
PTPN22 | Proximal transcriptional regulation |
ENSG00000231128 | Proximal transcriptional regulation |
ENSG00000231128 | Distal transcriptional regulation |
AP4B1 | Distal transcriptional regulation |
DCLRE1B | Distal transcriptional regulation |
ENSG00000231128 | RNA binding protein mediated regulation |
PTPN22 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014