SNP Report

Basic Infomation

Name	rs1230656 dbSNP
Location	chr:1,114222516
Allele	C/A

LD-proxy of rSNPs(r²>0.8) (count: 146)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10745339	0.82[ASN][1000 genomes]
rs10858000	0.82[ASN][1000 genomes]
rs10858001	0.81[ASN][1000 genomes]
rs10858002	0.80[ASN][1000 genomes]
rs10858005	0.86[ASN][1000 genomes]
rs10858007	0.86[ASN][1000 genomes]
rs10858008	0.84[ASN][1000 genomes]
rs10858011	0.89[ASN][1000 genomes]
rs10858017	0.82[EUR][1000 genomes]
rs10858018	0.81[EUR][1000 genomes]
rs10858019	0.82[EUR][1000 genomes]
rs11102648	0.82[ASN][1000 genomes]
rs11102649	0.82[ASN][1000 genomes]
rs11102651	0.82[ASN][1000 genomes]
rs11102652	0.85[ASN][1000 genomes]
rs11102653	0.84[ASN][1000 genomes]
rs11102654	0.86[ASN][1000 genomes]
rs11102657	0.81[ASN][1000 genomes]
rs11102658	0.83[ASN][1000 genomes]
rs11102661	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11102669	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1113523	0.88[ASN][1000 genomes]
rs1146182	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1146187	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12021513	0.85[ASN][1000 genomes]
rs12035317	0.85[ASN][1000 genomes]
rs12037873	0.84[ASN][1000 genomes]
rs12039224	0.85[ASN][1000 genomes]
rs12041547	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12043639	0.83[ASN][1000 genomes]
rs12044534	0.82[EUR][1000 genomes]
rs12061482	0.82[EUR][1000 genomes]
rs12063216	0.82[EUR][1000 genomes]
rs12074958	0.85[ASN][1000 genomes]
rs12077419	0.86[ASN][1000 genomes]
rs1217192	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1217193	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1217199	0.90[ASN][1000 genomes]
rs1217200	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1217201	0.86[ASN][1000 genomes]
rs1217203	0.86[ASN][1000 genomes]
rs1217204	0.86[ASN][1000 genomes]
rs1217208	0.89[ASN][1000 genomes]
rs1217210	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1217211	0.89[ASN][1000 genomes]
rs1217214	0.88[ASN][1000 genomes]
rs1217215	0.89[ASN][1000 genomes]
rs1217221	0.81[ASN][1000 genomes]
rs1217223	0.89[ASN][1000 genomes]
rs1217226	0.89[ASN][1000 genomes]
rs1217227	0.89[ASN][1000 genomes]
rs1217228	0.88[ASN][1000 genomes]
rs1217230	0.90[ASN][1000 genomes]
rs1217232	0.89[ASN][1000 genomes]
rs1217233	0.89[ASN][1000 genomes]
rs1217234	0.89[ASN][1000 genomes]
rs1217235	0.89[ASN][1000 genomes]
rs1217236	0.89[ASN][1000 genomes]
rs1217237	0.89[ASN][1000 genomes]
rs1217376	0.80[EUR][1000 genomes]
rs1217377	0.81[EUR][1000 genomes]
rs1217380	0.81[EUR][1000 genomes]
rs1217388	0.81[EUR][1000 genomes]
rs1217389	0.81[EUR][1000 genomes]
rs1217395	0.81[EUR][1000 genomes]
rs1217396	0.81[EUR][1000 genomes]
rs1217407	0.80[EUR][1000 genomes]
rs1217410	0.80[EUR][1000 genomes]
rs1217412	0.81[EUR][1000 genomes]
rs1217413	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1217416	0.89[EUR][1000 genomes]
rs1228280	0.89[ASN][1000 genomes]
rs1230637	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1230638	0.84[EUR][1000 genomes]
rs1230639	0.84[EUR][1000 genomes]
rs1230640	0.85[EUR][1000 genomes]
rs1230642	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1230645	0.85[EUR][1000 genomes]
rs1230646	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1230647	0.86[EUR][1000 genomes]
rs1230649	0.89[EUR][1000 genomes]
rs1230655	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1230658	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1230659	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1230661	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1230663	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1230671	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1230674	0.83[EUR][1000 genomes]
rs1230678	0.82[EUR][1000 genomes]
rs1230679	0.82[EUR][1000 genomes]
rs1230685	0.82[EUR][1000 genomes]
rs1235687	0.88[ASN][1000 genomes]
rs1235688	0.89[ASN][1000 genomes]
rs1237289	0.89[ASN][1000 genomes]
rs1237682	0.90[EUR][1000 genomes]
rs12565589	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1343125	0.85[ASN][1000 genomes]
rs1343128	0.86[ASN][1000 genomes]
rs1418957	0.85[ASN][1000 genomes]
rs1418958	0.85[ASN][1000 genomes]
rs1599971	0.81[EUR][1000 genomes]
rs17013326	0.82[ASN][1000 genomes]
rs17031716	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1743605	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1777234	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1777237	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1777238	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1777241	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1936398	0.88[EUR][1000 genomes]
rs1981319	0.85[EUR][1000 genomes]
rs2093436	0.85[EUR][1000 genomes]
rs2153977	0.83[ASN][1000 genomes]
rs2243471	0.89[EUR][1000 genomes]
rs2295853	0.86[EUR][1000 genomes]
rs2358816	0.82[EUR][1000 genomes]
rs2359167	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2488457	0.86[EUR][1000 genomes]
rs2488458	0.80[EUR][1000 genomes]
rs2636002	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2636013	0.85[EUR][1000 genomes]
rs2636014	0.85[EUR][1000 genomes]
rs2797408	0.82[EUR][1000 genomes]
rs2797409	0.82[EUR][1000 genomes]
rs2797412	0.82[EUR][1000 genomes]
rs2798135	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2798138	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2884703	0.85[ASN][1000 genomes]
rs2884704	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4145859	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4274063	0.82[ASN][1000 genomes]
rs4423005	0.85[EUR][1000 genomes]
rs4456089	0.81[ASN][1000 genomes]
rs4565712	0.82[EUR][1000 genomes]
rs4600045	0.85[EUR][1000 genomes]
rs4838997	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61817589	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6537792	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6537795	0.82[EUR][1000 genomes]
rs6663679	0.85[EUR][1000 genomes]
rs6689879	0.84[ASN][1000 genomes]
rs6698586	0.86[EUR][1000 genomes]
rs6704188	0.86[ASN][1000 genomes]
rs72687973	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72687980	0.86[ASN][1000 genomes]
rs7536360	0.85[ASN][1000 genomes]
rs7553188	0.85[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
MAGI3	Distal transcriptional regulation
MAGI3	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)