SNP Report
Basic Infomation
| Name | rs1230678 dbSNP |
|---|---|
| Location | chr:1,114298420 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 133)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10858005 | 0.80[EUR][1000 genomes] |
| rs10858007 | 0.81[EUR][1000 genomes] |
| rs10858011 | 0.81[EUR][1000 genomes] |
| rs10858017 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10858018 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10858019 | 0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10858021 | 0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11102653 | 0.80[EUR][1000 genomes] |
| rs11102654 | 0.80[EUR][1000 genomes] |
| rs11102661 | 0.85[EUR][1000 genomes] |
| rs11102669 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11102689 | 0.80[EUR][1000 genomes] |
| rs11102691 | 0.86[EUR][1000 genomes] |
| rs1113523 | 0.81[EUR][1000 genomes] |
| rs1146182 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1146187 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12041547 | 0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12044534 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12061482 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12063216 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12077419 | 0.80[EUR][1000 genomes] |
| rs1217192 | 0.85[EUR][1000 genomes] |
| rs1217193 | 0.85[EUR][1000 genomes] |
| rs1217199 | 0.81[EUR][1000 genomes] |
| rs1217200 | 0.85[EUR][1000 genomes] |
| rs1217201 | 0.81[EUR][1000 genomes] |
| rs1217203 | 0.81[EUR][1000 genomes] |
| rs1217204 | 0.81[EUR][1000 genomes] |
| rs1217210 | 0.91[EUR][1000 genomes] |
| rs1217211 | 0.81[EUR][1000 genomes] |
| rs1217214 | 0.80[EUR][1000 genomes] |
| rs1217215 | 0.80[EUR][1000 genomes] |
| rs1217223 | 0.81[EUR][1000 genomes] |
| rs1217226 | 0.80[EUR][1000 genomes] |
| rs1217227 | 0.81[EUR][1000 genomes] |
| rs1217228 | 0.81[EUR][1000 genomes] |
| rs1217230 | 0.81[EUR][1000 genomes] |
| rs1217232 | 0.81[EUR][1000 genomes] |
| rs1217233 | 0.81[EUR][1000 genomes] |
| rs1217234 | 0.81[EUR][1000 genomes] |
| rs1217235 | 0.81[EUR][1000 genomes] |
| rs1217236 | 0.81[EUR][1000 genomes] |
| rs1217237 | 0.81[EUR][1000 genomes] |
| rs1217376 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1217377 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1217380 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1217386 | 0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1217388 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1217389 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1217395 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1217396 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1217407 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1217410 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1217412 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1217413 | 0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1217416 | 0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1217421 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1230637 | 0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1230638 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1230639 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1230640 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1230642 | 0.85[ASN][1000 genomes] |
| rs1230645 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1230646 | 0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1230647 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1230649 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1230655 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1230656 | 0.82[EUR][1000 genomes] |
| rs1230658 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs1230659 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs1230661 | 0.82[EUR][1000 genomes] |
| rs1230663 | 0.87[EUR][1000 genomes] |
| rs1230671 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1230674 | 0.85[EUR][1000 genomes] |
| rs1230679 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1230680 | 0.97[AFR][1000 genomes] |
| rs1230682 | 0.83[AFR][1000 genomes] |
| rs1230683 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1230685 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1230686 | 0.83[AFR][1000 genomes] |
| rs1235687 | 0.81[EUR][1000 genomes] |
| rs1235688 | 0.81[EUR][1000 genomes] |
| rs1237289 | 0.81[EUR][1000 genomes] |
| rs1237682 | 0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12565589 | 0.85[EUR][1000 genomes] |
| rs12566340 | 0.91[EUR][1000 genomes] |
| rs12760067 | 0.80[ASN][1000 genomes] |
| rs1343125 | 0.81[EUR][1000 genomes] |
| rs1343128 | 0.80[EUR][1000 genomes] |
| rs1418958 | 0.81[EUR][1000 genomes] |
| rs1599971 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1743605 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1775754 | 0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1777234 | 0.88[EUR][1000 genomes] |
| rs1777237 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1777238 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1777241 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1935838 | 0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1936398 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1981319 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2093436 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2243471 | 0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2295853 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2358816 | 0.82[EUR][1000 genomes] |
| rs2359167 | 0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2488457 | 0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2488458 | 0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2636002 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs2636013 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2636014 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2797408 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2797409 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2797412 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2797414 | 0.85[AFR][1000 genomes] |
| rs2798135 | 0.90[EUR][1000 genomes] |
| rs2798138 | 0.90[EUR][1000 genomes] |
| rs4145859 | 0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4423005 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4565712 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4600045 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4838997 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs4838998 | 0.85[ASN][1000 genomes] |
| rs61817589 | 0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6537792 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6537795 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6663679 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6698586 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72687980 | 0.80[EUR][1000 genomes] |
| rs7526209 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7529353 | 0.91[EUR][1000 genomes] |
| rs7536360 | 0.81[EUR][1000 genomes] |
| rs7553188 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9429730 | 0.93[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RSBN1 | Distal transcriptional regulation |
| ENSG00000231128 | Distal transcriptional regulation |
| PHTF1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014